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Payroll Compliance Checklist for Small Businesses (2026)

Payroll is more than just writing checks. In the Philippines, it is a complex legal requirement to act as a withholding agent for the government. If you miss a deadline or miscalculate a contribution, the penalties can quickly eat through a small business's profit margins.

Phase 1: Mandatory Registrations

Before you hire your first employee, ensure your business is registered as an Employer with these four agencies. Being registered as a "Business" (DTI/SEC) is not the same as being registered as an "Employer."

BIR Employer Registration: Update your Form 1905 to include "Withholding Tax on Compensation."
SSS Employer ID: Secure your 10-digit SSS employer number.
PhilHealth Employer Number (PEN): Required for health insurance remittances.
Pag-IBIG Employer ID: Essential for housing fund contributions.
DOLE Rule 1020: Register your establishment with the Department of Labor and Employment.

Phase 2: Monthly Recurring Deadlines

In 2026, the remittance schedule generally follows the "following month" rule. Note that if a deadline falls on a weekend or holiday, it is usually moved to the next business day.

Agency & Form Deadline What to Remit
BIR Form 1601-C 10th (eFPS) / 15th (Manual) Withholding Tax on Compensation
Pag-IBIG 15th of the following month Employee + Employer Shares
SSS Last day of the month* Contributions & Loan Payments
PhilHealth 25th of the following month Standard 5% Premium Split

*Note: SSS deadlines can vary (10th to 25th) based on the last digit of your Employer ID Number.

Phase 3: Annual Compliance

The end of the year is the busiest time for payroll officers. The BIR requires reconciliation of all taxes withheld throughout the year.

1. BIR Form 1604-C (Annual Information Return)

Due by January 31 of the following year. This is a summary of all compensation paid and taxes withheld for the entire year. It must be accompanied by the Alphalist of Employees.

2. BIR Form 2316

You must issue this certificate to every employee on or before January 31. It serves as their proof of tax payment. For employees who resign mid-year, you must issue this on the day they receive their final pay.

3. 13th Month Pay

By law, the 13th month pay must be paid to all rank-and-file employees no later than December 24. You are required to file a report of compliance with DOLE via their online portal before January 15.

Phase 4: Record-keeping Requirements

Under the Labor Code and Tax Code, small businesses must maintain the following records for at least **three (3) years** (though we recommend ten years for tax purposes):